mixing datasets when dragging from a collection to toolpanel

martenson commented 3 years ago

Describe the bug I have a collection of paired fastq.gz datasets, I wanted to run a fastqc on one of the forward reads so I dragged it into the tool panel and executed fastqc. Fastqc job ended up with this error (note the first line)

Failed to process GROMACS solvation and adding ions on data 2 and data 4
uk.ac.babraham.FastQC.Sequence.SequenceFormatException: ID line didn't start with '@'
    at uk.ac.babraham.FastQC.Sequence.FastQFile.readNext(FastQFile.java:158)
    at uk.ac.babraham.FastQC.Sequence.FastQFile.<init>(FastQFile.java:89)
    at uk.ac.babraham.FastQC.Sequence.SequenceFactory.getSequenceFile(SequenceFactory.java:87)
    at uk.ac.babraham.FastQC.Sequence.SequenceFactory.getSequenceFile(SequenceFactory.java:62)
    at uk.ac.babraham.FastQC.Analysis.OfflineRunner.processFile(OfflineRunner.java:159)
    at uk.ac.babraham.FastQC.Analysis.OfflineRunner.<init>(OfflineRunner.java:121)
    at uk.ac.babraham.FastQC.FastQCApplication.main(FastQCApplication.java:316)

If I click on "run this job again I have this in the toolform:

Galaxy___Europe

There is no dataset like that in my history and I am pretty sure I never ran GROMACS tool.

Galaxy

Galaxy Version and/or server at which you observed the bug Galaxy Version: 21.05 - usegalaxy.eu

Expected behavior I'd expect the fastqc to be ran on 53: CB1C12_S88_R1_001.fastq.gz

wm75 commented 3 years ago

This may be the same as #12576 ?

martenson commented 3 years ago

@wm75 not sure about this, perhaps in combination with another bug, since this is not a value that was there before -- it is a dataset owned by someone else.

wm75 commented 3 years ago

Ouch! Then, yes, that seems to be different.

galaxyproject / galaxy

mixing datasets when dragging from a collection to toolpanel #12729