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Visualizations/Charts: Boxplot fails to render #16191

Open jennaj opened 1 year ago

jennaj commented 1 year ago

Describe the bug Boxplot fails to render. Tabular output is generated, but no graphic. Either in Galaxy or when downloaded ("blank png").

Seems related to https://github.com/galaxyproject/galaxy/issues/13437

Galaxy Version and/or server at which you observed the bug Galaxy version 23.0.1.dev0, commit 6c4141bee122d505178160f9f1ce05a6563ef950 but also at UseGalaxy.eu.

To Reproduce Steps to reproduce the behavior:

  1. Create a boxplot graphic
  2. Wait for that to process
  3. No graphic
  4. Seems to loop back into creating the graphic if that is accessed from User > Visualizations

Expected behavior Create a graphic. Other charts do plot on the same input, including the formatted output from this chart type.

Screenshots If applicable, add screenshots to help explain your problem.

Additional context

History with output from the boxplot tool. Never renders. https://usegalaxy.org/u/jen-galaxyproject/h/test-ghelp-8152

This is the blank graphic produced... New Chart ... in between here.

Xref https://help.galaxyproject.org/t/visualization-of-box-plot-jqplot-problem/8152/10

kostrykin commented 1 year ago

I just tested it again and noticed that it is still broken. Are there any plans when this is going to be fixed?

assuntad23 commented 1 year ago

Hello @kostrykin I'll move that up in my priorities, so that I get it done sometime this week or next, depending on the complexity.

Thanks for bringing this to my attention!

assuntad23 commented 1 year ago

completed!

dannon commented 1 year ago

Let's leave this open for now, but I'll reassign to myself. There's more to do to actually update the boxplot viz.

tlaguna commented 1 year ago

Hi there, I have exactly the same issue using the Iris dataset, no graph produced.

kostrykin commented 1 year ago

Hi there, I have exactly the same issue using the Iris dataset, no graph produced.

Can confirm. I don't know which version of Galaxy you tried, and I'm unsure what the v23.1.2.dev0 version is that usegalaxy.org and usegalaxy.eu are running (there is no such tag, is this supposed to be the release_23.1 branch?), but I suppose that the fixes are not yet included in this release?

martenson commented 1 year ago

All three pull requests referenced in this issue are deployed on usegalaxy.org afaik. We'll investigate.