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galaxyproject / galaxy

Data intensive science for everyone.
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"Focusing" Galaxy on a particular genome #18882

Open nekrut opened 2 months ago

nekrut commented 2 months ago

Click through:

  1. Suppose you are starting at a BRC-analytics page listing available genomes:

image

  1. Now suppose you select Anopheles bellator and click the "Analyze" button:

image

  1. You then get to the analysis page:

image

  1. From here if you click "Analyze" adjacent to Variant calling you will jump to Galaxy.

What is needed:

Once you are in Galaxy we need to ensure that the dbKey is set to this particular genome version. This means that dropdowns like this (this is from bwa-mem but this should work for any tool that relies on reference data):

image

are pre-populated with the right genome ID.

nekrut commented 1 month ago

see https://github.com/mvdbeek/iwc/blob/website/website/pages/workflow/%5Bid%5D.vue#L56-L73

what about user account sin this context?