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Problems upgrading to 20.01 #9745

Closed bampolsk closed 1 year ago

bampolsk commented 4 years ago

I'm trying to upgrade from galaxy 17.01 to 20.01. I initially run:

git fetch origin && git checkout release_20.01 && git pull --ff-only origin release_20.01

And, get a message that I need to commit local changes:

error: Your local changes to the following files would be overwritten by checkout: config/plugins/interactive_environments/jupyter/config/jupyter.xml config/plugins/interactive_environments/jupyter/templates/jupyter.mako config/plugins/interactive_environments/rstudio/static/js/rstudio.js config/plugins/interactive_environments/rstudio/templates/rstudio.mako config/plugins/tours/core.galaxy_ui.yaml config/plugins/tours/core.history.yaml config/plugins/tours/core.scratchbook.yaml config/plugins/visualizations/charts/config/charts.xml config/plugins/visualizations/charts/package.json config/plugins/visualizations/charts/templates/charts.mako config/plugins/visualizations/csg/templates/csg.mako config/plugins/visualizations/graphviz/config/graphviz.xml config/plugins/visualizations/graphviz/static/js/toolPanelFunctions.js config/plugins/visualizations/graphviz/templates/graphviz.mako config/plugins/visualizations/scatterplot/templates/scatterplot.mako config/tool_conf.xml.main Please, commit your changes or stash them before you can switch branches. Aborting

So, I backout the update and run git commit. I get the following:

[root@paros-web galaxy]# git commit On branch release_17.01 Your branch is up-to-date with 'origin/release_17.01'. Changes not staged for commit:

<long list of deleted/modified files> and then: Untracked files: ca-cert.pem client-cert.pem client-key.pem config/plugins/visualizations/charts/Gruntfile.js config/plugins/visualizations/charts/static/app.css config/plugins/visualizations/charts/static/app.js config/plugins/visualizations/charts/static/charts/ config/plugins/visualizations/charts/static/library/ config/plugins/visualizations/charts/static/models/ config/plugins/visualizations/charts/static/plugins/ config/plugins/visualizations/charts/static/views/ config/plugins/visualizations/graphview/ paster.log.2017-05-26 static/cats/ static/images/avispa.png static/images/biociph_biglogo.png static/images/penn_fulllogo.png static/majiq-cat static/majiq_spel/ static/rbp-pokedex/ static/rnagroup/ static/voila/ tools/majiq_spel/ tools/prime/ xxx

no changes added to commit

Then I do git push origin:

[root@paros-web galaxy]# git push origin Username for 'https://github.com': bampolsk Password for 'https://bampolsk@github.com': remote: Permission to galaxyproject/galaxy.git denied to bampolsk. fatal: unable to access 'https://github.com/galaxyproject/galaxy.git/': The requested URL returned error: 403 [root@paros-web galaxy]#

I know that when i start git push origin, that my entered password is correct. Is it possible I don't have commit access? or? I must get this done before I can rerun

git fetch origin && git checkout release_20.01 && git pull --ff-only origin release_20.01

I would appreciate any suggestions as soon as possible so I can complete this upgrade.

hexylena commented 1 year ago

Generally you cannot skip versions when updating. Apolgoies that this never received a response, in the future I can recommend writing in the admins channel for help.