galaxyproject / gxadmin

Handy command line utility for Galaxy administrators :rocket:
https://galaxyproject.github.io/gxadmin/#/
GNU General Public License v3.0
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Fix query_tool-metrics function #129

Closed sanjaysrikakulam closed 1 year ago

sanjaysrikakulam commented 1 year ago

This PR https://github.com/galaxyproject/gxadmin/pull/107 replaced the variable $arg_metric_id with hardcoded metric_name runtime_seconds. This is now fixed with this PR.

sanjaysrikakulam commented 1 year ago

Here is the output for gxadmin filter histogram.

stats@sn06:~/sanjay$ cat rna_star_out_histo_3 | gxadmin filter histogram
(   0.104,   12.614) n=23228 **************
[  12.614,   25.124) n=15873 *********
[  25.124,   37.634) n=80849 **************************************************
[  37.634,   50.144) n=45171 ***************************
[  50.144,   62.654) n=37672 ***********************
[  62.654,   75.163) n=20549 ************
[  75.163,   87.673) n=7726  ****
[  87.673,  100.183) n=7390  ****
[ 100.183,  112.693) n=4309  **
[ 112.693,  125.203) n=1686  *
[ 125.203,  137.713) n=975
[ 137.713,  150.223) n=970
[ 150.223,  162.733) n=746
[ 162.733,  175.243) n=695
[ 175.243,  187.752) n=1211
[ 187.752,  200.262) n=932
[ 200.262,  212.772) n=551
[ 212.772,  225.282) n=815
[ 225.282,  237.792) n=204
[ 237.792,  250.302) n=366
[ 250.302,  262.812) n=189
[ 262.812,  275.322) n=850
[ 275.322,  287.832) n=242
[ 287.832,  300.341) n=240
[ 300.341,  312.851) n=160
[ 312.851,  325.361) n=942
[ 325.361,  337.871) n=652
[ 337.871,  350.381) n=35
[ 350.381,  362.891) n=441
[ 362.891,  375.401) n=84
[ 375.401,  387.911) n=68
[ 387.911,  400.421) n=110
[ 400.421,  412.930) n=172
[ 412.930,  425.440) n=8
[ 425.440,  437.950) n=22
[ 437.950,  450.460) n=59
[ 450.460,  462.970) n=30
[ 462.970,  475.480) n=36
[ 475.480,  487.990) n=12
[ 487.990,  500.500) n=69
[ 500.500,  513.010) n=738
[ 513.010,  525.519) n=227
[ 525.519,  538.029) n=17
[ 538.029,  550.539) n=17
[ 550.539,  563.049) n=2
[ 563.049,  575.559) n=0
[ 575.559,  588.069) n=14
[ 588.069,  600.579) n=2
[ 600.579,  613.089) n=26
[ 613.089,  625.599) n=18
[ 625.599,  638.108) n=4
[ 638.108,  650.618) n=83
[ 650.618,  663.128) n=14
[ 663.128,  675.638) n=17
[ 675.638,  688.148) n=1
[ 688.148,  700.658) n=18
[ 700.658,  713.168) n=41
[ 713.168,  725.678) n=23
[ 725.678,  738.188) n=90
[ 738.188,  750.697) n=20
[ 750.697,  763.207) n=0
[ 763.207,  775.717) n=6
[ 775.717,  788.227) n=4
[ 788.227,  800.737) n=18
[ 800.737,  813.247) n=38
[ 813.247,  825.757) n=0
[ 825.757,  838.267) n=21
[ 838.267,  850.777) n=14
[ 850.777,  863.286) n=0
[ 863.286,  875.796) n=0
[ 875.796,  888.306) n=0
[ 888.306,  900.816) n=0
[ 900.816,  913.326) n=14
[ 913.326,  925.836) n=19
[ 925.836,  938.346) n=27
[ 938.346,  950.856) n=18
[ 950.856,  963.366) n=14
[ 963.366,  975.875) n=3
[ 975.875,  988.385) n=0
[ 988.385, 1000.895) n=4
[1000.895, 1013.405) n=0
[1013.405, 1025.915) n=0
[1025.915, 1038.425) n=0
[1038.425, 1050.935) n=0
[1050.935, 1063.445) n=1
[1063.445, 1075.955) n=1
[1075.955, 1088.465) n=0
[1088.465, 1100.974) n=0
[1100.974, 1113.484) n=0
[1113.484, 1125.994) n=0
[1125.994, 1138.504) n=0
[1138.504, 1151.014) n=0
[1151.014, 1163.524) n=0
[1163.524, 1176.034) n=0
[1176.034, 1188.544) n=0
[1188.544, 1201.054) n=0
[1201.054, 1213.563) n=0
[1213.563, 1226.073) n=0
[1226.073, 1238.583) n=0
[1238.583, 1251.093) n=0
[1251.093, 1263.603) n=0
[1263.603, 1276.113) n=0
[1276.113, 1288.623) n=0
[1288.623, 1301.133) n=0
[1301.133, 1313.643) n=0
[1313.643, 1326.152) n=0
[1326.152, 1338.662) n=0
[1338.662, 1351.172) n=0
[1351.172, 1363.682) n=0
[1363.682, 1376.192) n=0
[1376.192, 1388.702) n=0
[1388.702, 1401.212) n=0
[1401.212, 1413.722) n=1
[1413.722, 1426.232) n=0
[1426.232, 1438.741) n=0
[1438.741, 1451.251) n=0
[1451.251, 1463.761) n=0
[1463.761, 1476.271) n=0
[1476.271, 1488.781) n=0
[1488.781, 1501.291) n=0
[1501.291, 1513.801) n=0
[1513.801, 1526.311) n=0
[1526.311, 1538.821) n=0
[1538.821, 1551.330) n=0
[1551.330, 1563.840) n=0
[1563.840, 1576.350) n=0
[1576.350, 1588.860) n=0
[1588.860, 1601.370) n=0
[1601.370, 1613.880) n=3
hexylena commented 1 year ago

Cool, so it does work! (Albeit a bit ugly with the number of buckets) but, ok, we can go ahead and replace that in the docs then.

sanjaysrikakulam commented 1 year ago

Thank you @hexylena