Open jennaj opened 7 years ago
And "is there an off the shelf, documented, community maintained workflow for X?"
just you and me, Jen?
Maybe we start it then pull in others with expertise depending on the "domains" we cover / who is attending the hacks (or wants to help anyway, even remote)?
Thinking about the domains to target seems like a good next step. Would be nice to get to those without much organized existing help. Maybe can start list in this issue or create a new one and link it in?
Would also be good to draft hub and domain pages specific pages as markdown templates, ideally before the hack (can always tune it there).
And for this
pvanheus @pvanheus Apr 10 13:43
thanks @jennaj - trying to think how this could incorporate other tools...
esp. toolshed and biostars
Also, perhaps we can leverage the new https://galaxyproject.org/ search functionality in some way to make sure all resources are brought in and stay current without direct curation. But I haven't thought this through yet... :)
btw: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1457-z
I think this paper illustrates the overwhelming complexity that faces a RNA-seq practicioner well.
Wow "Here, we evaluate 219 combinatorial implementations of the most commonly used analysis tools"
We probably won't cover them all :)
Content to cover which tool to use, when, and why. A conversational tone seems best. Sort of a "Best of" for sci advice. Not a true tutorial, but could serve as a summary/baseline for one at a future time (or may already be included in a tutorial, but hard to find for quick Q&A).
Organize
Examples (RNA-seq):
Suggested on Gitter by: