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galaxyproject / hack-the-galaxy-gcc2017

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Project Idea: Galaxy Flavors #6

Open malloryfreeberg opened 7 years ago

malloryfreeberg commented 7 years ago

Develop training and documentation for Galaxy Flavors. Good for advanced users.

bebatut commented 7 years ago

Example of Docker with installation of workflows, data libraries and data managers: https://github.com/IFB-ElixirFr/ReproHackathon/blob/master/reprohackathon1/galaxy/Dockerfile

vjmulat commented 7 years ago

Documentation to create a new flavor from an existing galaxy docker image: https://github.com/vjmulat/gcc2017_dockerflavor_demo/blob/master/INSTALL.md

yvanlebras commented 7 years ago

Working In Progress with

dktanwar commented 7 years ago

@yvanlebras I also did on MacOS

dktanwar commented 7 years ago

What's wrong with my Dockerfile ? I cannot see workflow and cannot create labels for tools from yaml file

yvanlebras commented 7 years ago

Guide to add tools from webhook use: https://github.com/bgruening/docker-galaxy-stable#Extending-the-Docker-Image

yvanlebras commented 7 years ago

Concerning workflow installation:

Where all Galaxy workflows needs to be in one directory, here the $GALAXY_HOME/workflows/.

yvanlebras commented 7 years ago

oh yes @dktanwar ! I think I got it! You don't give the $GALAXY_DEFAULT_ADMIN_USER and $GALAXY_DEFAULT_ADMIN_PASSWORD ;) You have to modify it giving the real info ;)

dktanwar commented 7 years ago

Oh shoot! I thought that it will automatically take the default admin@galaxy.org anyways, updated it. I will update once it is done! Thanks a lot!

dktanwar commented 7 years ago

@yvanlebras : workflow.pptx

dktanwar commented 7 years ago

@yvanlebras Please let me know if you would like me to update anything.

yvanlebras commented 7 years ago

thanks @dktanwar ! I will check if possible to present it!