IWC goals 21.09

[mvdbeek]

We've had a meeting today and we focused on these things we would like to accomplish:

• Get the IWC started

  • [x] Writing how to contribute (@mvdbeek) https://github.com/galaxyproject/iwc/pull/41
  • [x] Best practices: (@mvdbeek) (Based on / linked to planemo documentation) https://github.com/galaxyproject/iwc/pull/41
    • [x] Don’t include internal galaxy version
    • [x] Require release tag (or something)
  • [ ] Deposit workflows
    • [ ] OpenMS (@bernt-matthias )
    • [ ] RNAseq (@mvdbeek )
    • [x] Update Covid Workflows (@wm75 )
    • [x] Add some computational chemistry workflows (@simonbray ) https://github.com/galaxyproject/iwc/pull/68
  • [ ] Deploy workflows to usegalaxy.* (and interested community servers) (@mvdbeek)
    • [ ] And/or let deployers specify list of workflows to monitor
    • [ ] Maybe integration with usegalaxy-tools (???) (Stretchgoal)
  • [ ] Community outreach, find contributors (everyone)

• Enhance Galaxy for IWC

  • [ ] Link inside the app to update workflow (@jmchilton )
  • [ ] Update mechanism for TRS workflows (@jmchilton )
  • [ ] Display CHANGELOG/History
  • [x] Improve / fix TRS search
  • [x] https://github.com/galaxyproject/galaxy/issues/12176
  • [ ] “Request tools for this workflow” (Stretch goal)
  • [ ] Additional Markdown description field (@mvdbeek )
  • [ ] Prettier diffs (maybe in planemo)
    • [x] Convert .ga files to format2 format (https://github.com/galaxyproject/gxformat2/pull/64)
    • [ ] Switch Export Default to YAML (@jmchilton )
      • [ ] More testing? (@wm75 )
      • [ ] More manual inspection

• Continue improving command line execution with planemo:

  • [x] Rerun with planemo run (@simonbray ) https://github.com/galaxyproject/planemo/pull/1140
  • [x] Workflow execution reports (@simonbray ) https://github.com/galaxyproject/planemo/pull/1153

• Static Display of Workflows in Repo (Stretch Goal - @jmchilton )

  • [ ] Linking test data, pages for describing how to run.

We've decided on monthly meetings, every 3rd Monday of the Month. A calendar is here

[nekrut]

Explore connection with the Cancer Informatics WG as they have a number of "production ready" workflows. There are also cancer workflows being developed by Christophe Antoniewsky