Hello! This is an automated update of the following workflow: workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.
By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.31.1
The workflow release number has been updated from 0.4.2 to 0.4.3.
Hello! This is an automated update of the following workflow: workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.
By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0should be updated totoolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.31.1The workflow release number has been updated from 0.4.2 to 0.4.3.