Add 'Bacterial genome assembly' workflow

[clsiguret]

This workflow comes from the ABRomics project and can be used for any bacterial genomic analysis: Bacterial Genome assembly for paired end data

We followed the recommendation to publish the workflow (licence, author list and email, steps annotations...)

• [x] Workflow imported from usegalaxy.fr using planemo workflow_test_init to use a valid invocation
• [x] Workflow tests passed using planemo test command on the usegalaxy.fr and usegalaxy.eu servers
• [x] Readme.md written
• [x] CHANGELOG.md written
• [x] .dockstore.yml written

[bgruening]

It was not possible to test on the usegalaxy.eu server, the tool refseq_masher_matches is not installed 😞

tool is now installed :)

[clsiguret]

It was not possible to test on the usegalaxy.eu server, the tool refseq_masher_matches is not installed 😞

tool is now installed :)

it works \o/ thanks !

[bebatut]

We need this PR to be merged as soon as possible to have time to update our workflows and tutorials before GCC and the French Bioinformatics conference next week. If I do not get any "No do not merge" by the middle of the day, I will merge it and we will make a V2 of the workflow later.

[mvdbeek]

I was going to rename this, and can we move this under genome assembly ?

[bebatut]

Thanks @mvdbeek and @wm75 for the reviews

[mvdbeek]

Attention: deployment cancelled!

https://github.com/galaxyproject/iwc/actions/runs/9544101557

[bebatut]

oh sorry. yes we can move it