How does one define inputs for TreeValGal?

galaxyproject / iwc

Galaxy Workflows maintained by the Intergalactic Workflow Commission

https://iwc.galaxyproject.org

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Open nekrut opened 1 month ago

nekrut commented 1 month ago

A clear procedure needs to be developed to gather inputs to run each new assembly:

Two assembled haplotypes (same contig names);
Optional NCBI gene/rna/protein taxon id and downloaded fasta files;
Optional haplotype or reference fasta from two or more closely related species for sequence similarity mapping;
Run repeatmodeler for repeatmasker if both can be made to work;

fubar2 commented 1 month ago

FWIW: Draft documentation includes some notes on inputs and the IWC PR is in.