workflow for enrichment analysis using goseq

[nilchia]

This workflow uses goseq to do GO and KEGG enrichment analysis on mm10 genome.

[github-actions[bot]]

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Test State	Count
Total	1
Passed	0
Error	1
Failure	0
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Errored Tests

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❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` File [/home/runner/work/iwc/iwc/workflows/transcriptomics/goseq/test-data/de-result.tabular] does not exist - parent directory [/home/runner/work/iwc/iwc/workflows/transcriptomics/goseq/test-data] does exist, cwd is [/home/runner/work/iwc/iwc] ```

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Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

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Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

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Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

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Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

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Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

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Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[github-actions[bot]]

Test Results (powered by Planemo)

Test Summary

Test State	Count
Total	1
Passed	0
Error	1
Failure	0
Skipped	0

Errored Tests

*

❌ goseq-go-kegg-enrichment-analsis.ga_0

**Execution Problem:** * ``` Unexpected HTTP status code: 400: {"err_msg":"Workflow cannot be run because input step '6' (DE result) is not optional and no input provided.","err_code":0} ```

[nilchia]

@mvdbeek and @lldelisle Thanks a lot for your review!

[nilchia]

I can't see the problem here. The test passes locally.

[lldelisle]

@mvdbeek I let you do a final review and merge if nothing to change.

[nilchia]

@lldelisle Thanks!

[bgruening]

Yeah! Congratulations @nilchia!