search

galaxyproject / planemo-machine

A packer.io configuration for building out Galaxy (http://galaxyproject.org/) tool development environments.
10 stars 16 forks source link

Galaxy 16.04 updates #60

Closed bgruening closed 8 years ago

bgruening commented 8 years ago

@jmchilton I still have the problem that planemo test is not working because the upload of files is not working in the planemo Galaxy instance. The upload in the supervisord Galaxy instance on localhost is working. Same behaviour I have seen under 16.01. So I try to think this is a planemo issue here in the machine? Any thought?

jmchilton commented 8 years ago

Do you have a VM with these updates? I can try to debug the test problem?

jmchilton commented 8 years ago

Docker Hub has some very fresh images with planemo 0.25.1 that have this same issue - the problem is that planemo uses Galaxy's config/job_conf.xml which has handlers defined that differ in name from the one used by the test framework.

bgruening commented 8 years ago

@jmchilton here are some older ones but with the same problem: https://drive.google.com/folderview?id=0B2xSE9muunQPdXdfNVRIS09lWUU&usp=sharing