A number of fixes and best-practice tweaks.

galaxyproject / planemo-machine

A packer.io configuration for building out Galaxy (http://galaxyproject.org/) tool development environments.

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A number of fixes and best-practice tweaks. #83

Open davebx opened 8 years ago

davebx commented 8 years ago

Clean up the local environment file.
Install R and BiocInstaller.
Install BioConductor R packages Rgraphviz and motifbreakR.
Use get_url for file downloads instead of curl or wget.
Use the known working method for enabling supervisord on boot.
Some post-playbook cleanup.
Rearrange some apt actions, consolidate others.

martenson commented 8 years ago

I am fine with changes (to my low understanding of packer and ansible) but I would rather not have them in the image that we will link out to conference attendees in one hour. We have no time to test.

Can we just add the requested R packages as a separate PR and build the image or are there actual bugs with the machine that this is fixing @davebx ?

bgruening commented 8 years ago

:+1: This looks great!

davebx commented 8 years ago

@martenson I have created pull request #84 based on master + these R additions.