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galaxyproject / planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
https://planemo.readthedocs.io/
MIT License
89 stars 85 forks source link

Add "Methylation" to planemo shed_init categories #348

Closed nturaga closed 8 years ago

nturaga commented 8 years ago

Methylation would be nice if it were added. More tools are coming up in that area now.

Error: Invalid value for "--category": invalid choice: Methylation. (choose from Assembly, ChIP-seq, Combinatorial Selections, Computational chemistry, Convert Formats, Data Managers, Data Source, Fasta Manipulation, Fastq Manipulation, Genome-Wide Association Study, Genomic Interval Operations, Graphics, Imaging, Metabolomics, Metagenomics, Micro-array Analysis, Next Gen Mappers, Ontology Manipulation, Phylogenetics, Proteomics, RNA, SAM, Sequence Analysis, Statistics, Systems Biology, Text Manipulation, Tool Dependency Packages, Tool Generators, Transcriptomics, Variant Analysis, Visualization, Web Services)

martenson commented 8 years ago

I think Planemo loads categories from MTS's API

nturaga commented 8 years ago

Then we can just add a category to the MTS API then. I'll get on that.

martenson commented 8 years ago

I can do that for you. Give me name and description.

nturaga commented 8 years ago

"Epigenetics" is a better category apparently according to Mike. That will encapsulate a bunch of tools in along with methylation.

martenson commented 8 years ago

And the description?

nturaga commented 8 years ago

"Tools for analyzing Epigenetic/Epigenomic datasets"

bgruening commented 8 years ago

@martenson Not sure about fetching the categories. See this one: https://github.com/galaxyproject/planemo/pull/285/files

hexylena commented 8 years ago

yep. they are hard coded in planemo.

martenson commented 8 years ago

It is hardcoded so it works offline I think. Nevertheless the category needs to go to TS first. Done.