I'm trying to install Pulsar from source, after successful installation and starting the pulsar server using ./run.sh command. The following error is thrown on the console when galaxy jobs are submitted to pulsar.
raise ImportError(POSTER_UNAVAILABLE_MESSAGE)
ImportError: Pulsar configured to use poster module - but it is unavailable. Please install poster.
however, poster package is not available for python 3.
Pulsar and galaxy are running on ubuntu 20.04 with python3.8.5
Galaxy job_conf.xml
<?xml version="1.0"?>
<!-- A sample job config that explicitly configures job running the way it is
configured by default (if there is no explicit config). -->
<job_conf>
<plugins>
<plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
<plugin id="pulsar_runner" type="runner" load="galaxy.jobs.runners.pulsar:PulsarRESTJobRunner">
<param id="galaxy_url">http://0.0.0.0:8080/</param>
</plugin>
</plugins>
<destinations default="local">
<destination id="local" runner="local"/>
<destination id="pulsar" runner="pulsar_runner">
<param id="url">http://localhost:8913/</param>
<param id="default_file_action">remote_transfer</param>
<param id="dependency_resolution">remote</param>
<param id="remote_metadata">False</param>
<param id="rewrite_parameters">True</param>
<param id="transport">curl</param>
<param id="manager">_default_</param>
</destination>
</destinations>
<tools>
<tool id="tp_tail_tool" destination="pulsar"/>
<tool id="tp_cut_tool" destination="pulsar"/>
<tool id="wc_gnu" destination="pulsar"/>
<tool id="fastqc" destination="pulsar" />
<tool id="toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1" destination="pulsar"/>
<tool id="toolshed.g2.bx.psu.edu/repos/mnhn65mo/csv_to_tabular/csv2tab_R/0.1" destination="pulsar"/>
</tools>
</job_conf>
I'm trying to install Pulsar from source, after successful installation and starting the pulsar server using ./run.sh command. The following error is thrown on the console when galaxy jobs are submitted to pulsar.
however, poster package is not available for python 3. Pulsar and galaxy are running on ubuntu 20.04 with python3.8.5
Galaxy job_conf.xml