Fix to CCAT tool - Githubissues

galaxyproject / tools-devteam

Contains a set of Galaxy Tools mostly written by the Galaxy Team.

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Fix to CCAT tool #598

Closed mtekman closed 2 years ago

mtekman commented 2 years ago

The tool (toolshed.g2.bx.psu.edu/repos/devteam/ccat/peakcalling_ccat/0.0.1.) kept throwing python2 errors:

File "/opt/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/ccat/a0c8dc671a23/ccat/ccat_wrapper.py", line 37
    except Exception, e:
                    ^
SyntaxError: invalid syntax

so I updated the wrapper.

There is one test that was already commented, so I only fixed the first two tests.

mtekman commented 2 years ago

Oh whoops, I've just seen there's a better PR for this already: https://github.com/galaxyproject/tools-devteam/pull/561

Any chance that that PR will get merged soon?

bernt-matthias commented 2 years ago

Merged the other one.

mtekman commented 2 years ago

cheers, I should have checked before I started this :grimacing: