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galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission
https://galaxyproject.org/iuc
MIT License
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segemehl package missing dependencies #1211

Closed bernt-matthias closed 6 years ago

bernt-matthias commented 7 years ago

package_segemehl_0_2_0 installation fails because of a missing dependency:

gcc -Wall -pedantic -std=c99 -g -O3 -DFIXINSMALL -DFIXINBACKSPLICE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Iibs/mathematics.o libs/memory.o libs/zran.o libs/fileio.o libs/biofiles.o libs/karlin.o.o libs/sufarray/sufarray.o libs/sufarray/charsequence.o libs/sufarray/multicharseq.o libs/radixsort.o libs/fileBins.o libs/stack.o libvtprogressbar.o libs/sufarray/mmchar.o libs/bitArray.o libs/bitVector.o libs/bitvectoralg.o libs/manout.o libs/kdchain.o libs/manopt.o libs/container.o libs/vstack.o libs/vqueue.o libs/alignment.o libs/sw.o libs/seqclip.o libs/iupac.o libs/hash.o libs/matchfilesfields.o libs/merge.o src/kdmatch.o src/segemehl.o -o segemehl.x -lm -lpthread -lz -lncurses

src -Ilibs -Ilibs/sufarray -Lsrc libs/debug.o libs/info.o libs/md5.o libs/stringutils.o libs/708.o l libs/kdseed.o libs/queues/aluruSort.o libs/sort.o libs/Makefile:197: recipe for target 'segemehl.x' failed

/usr/bin/ld: cannot find -lncurses

The missing dependency could be added as in: https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_samtools_1_2/tool_dependencies.xml

bernt-matthias commented 6 years ago

now conda: not relevant anymore