galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

https://galaxyproject.org/iuc

MIT License

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Open nekrut opened 6 years ago

nekrut commented 6 years ago

Poretools

[ ] It is absolutely unclear how to use SNPEff download and SNPEff Available databases
[ ] Get a sample set of reads from MEGA paper and call variants using FreeBayes against E. coli K-12
[ ] Install a SNPEff DB for K-12
[ ] Install SNPSift onto main
[ ] Annotate called variants using SNPEff
[ ] Filter variants using SNPSift Filter
[ ] Create a short tutorial on this for training materials

bgruening commented 6 years ago

nekrut commented 6 years ago

tell me more ... for E. coli?