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galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission
https://galaxyproject.org/iuc
MIT License
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SPAdes: processing collection problem #4658

Open gallardoalba opened 2 years ago

gallardoalba commented 2 years ago

Currently, datasets from collections are processed together. This behavior should be modified in order to assemble each dataset from the collections independently.

bernt-matthias commented 2 years ago

I guess there are usecases for batch and joint processing. So you know how other assembly tools are implemented in this regard? Would be best to have both supported by a conditional or a new param type.

gallardoalba commented 2 years ago

Yes, I think you are right; I'll include a new param for including both alternatives.

JayanthiGangiredla commented 2 years ago

Hi, I still see spades is processing datasets from collections together instead of running them individually.

gallardoalba commented 2 years ago

Hi @JayanthiGangiredla, yes, I didn't include the modifications yet. I'll try to work on it the next week.