academic free ONT base caller

galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

https://galaxyproject.org/iuc

MIT License

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academic free ONT base caller #5004

Open bgruening opened 1 year ago

bgruening commented 1 year ago

https://github.com/nanoporetech/dorado

The license is a bit quirky but it seems to be academic free?

nsoranzo commented 1 year ago

I think that would be problematic, see for example point 3.3 of the licence:

You may create and distribute a Larger Work under terms of Your choice, provided that You also comply with the requirements of this License for the Covered Software. The Larger Work may not be a combination of Covered Software with a work governed by one or more Secondary Licenses.

It would also go against what we say in CONTRIBUTING.md .

TomHarrop commented 4 months ago

Hi folks, I've put our dorado wrapper on the toolshed: https://toolshed.g2.bx.psu.edu/view/galaxy-australia/dorado/63d8ecfcfab1

We've tested in on Galaxy Australia running with Apptainer on GPU.

Not sure about the license issues, but if you decide it's appropriate for tools-iuc I'm happy to patch it across.

Happy GCC!

Tom