Open neoformit opened 1 year ago
low tech fix: link https://ecogenomics.github.io/GTDBTk/installing/index.html#gtdb-tk-reference-data in the parameter's help
on the long run create a new data table with a numeric version column that we can use to select
The DB URL field should might be better as a
select
field, with hard-coded values. That way admins will easily be able to select the appropriate version to download, and we can hard-code the correct DB ID into the GTDB-Tk tool wrapper so that users don't need to figure out which DB is appropriate for the current tool version (I picture lots of failed jobs as this is not obvious). Something like:Still figuring that out. Ok, let's assume the GTDB data manager choices are hard-coded, so we know the correct DB has an ID of
R202
.Then for the current GTDB-Tk tool we could have something like:
Originally posted by @neoformit in https://github.com/galaxyproject/tools-iuc/issues/5025#issuecomment-1360513051
I'm happy to go ahead and make these changes to the manager/tool - I think it will make for a much better experience for admins and end-users.