Missing paper from the SAMtools citation list

[valeriuo]

Describe the bug The citations section of SAMtools stats doesn't list the paper indicated on the official GitHub page of the tool.

Galaxy Version and/or server at which you observed the bug Galaxy Version: 22.05 Commit: NA

To Reproduce Steps to reproduce the behavior:

1. Go to https://usegalaxy.eu/
2. Click on the search box (top left) and type in samtools.
3. Select Samtools stats, the second item in the result list below.
4. In the middle pane, scroll to the bottom and see the Citations section.

Expected behavior The indicated paper to appear in the citation list.

Screenshots

Additional context Similar behaviour observed on a different Galaxy server (22.01).

[wm75]

@valeriuo can you transfer this issue to https://github.com/galaxyproject/tools-iuc/issues please? From the tools perspective, Galaxy is just a framework, for which tool wrappers are developed by different parties (tools-iuc being a major player). The samtools tools that you'll find installed on many Galaxy servers are getting developed here: https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools.

[wm75]

Thanks @mvdbeek !

[bernt-matthias]

Maybe I can include this here https://github.com/galaxyproject/tools-iuc/pull/5102

[bgruening]

@valeriuo I added a commit that removed the other citations and just added the main citation that is given in the github repo of samtools. Does this look good to you?

[bernt-matthias]

@bgruening I think the other citations are also useful for the users (but not for exporting tool citations). Maybe we should leave them included and think about something like this: https://github.com/galaxyproject/galaxy/issues/15438

[valeriuo]

@bgruening Maybe the links can be kept as well. The latest paper references the other three papers (with doi number).