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galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission
https://galaxyproject.org/iuc
MIT License
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BMGE tool would be helpful on the public server #5998

Open jaredbernard opened 4 months ago

jaredbernard commented 4 months ago

I see the BMGE tool is already in the Galaxy ToolShed (https://testtoolshed.g2.bx.psu.edu/view/dcorreia/bmge/a943abb980db), but not yet on the public servers as far as I can tell. I'm most interested in using the function of being able to trim codon alignments. Here is a link to other BMGE functions. I'm using the Galaxy Europe server, but could switch to another public server if needed.

bernt-matthias commented 4 months ago

https://galaxy.pasteur.fr/root?tool_id=toolshed.pasteur.fr/repos/dcorreia/bmge/bmge/1.12_1

Would be good to know if they have a github. They're are a few things that could be improved.

jaredbernard commented 3 months ago

They don't seem to have github but they have giphy, where there is a new version of BMGE: https://urldefense.com/v3/__https://gitlab.pasteur.fr/GIPhy/BMGE__;!!PvDODwlR4mBZyAb0!ROlP4-3dTlcZCCJVF-OVOYPe_ImqgwnqFOrmwT_9YD3QKtfA2CNuNZXPttSZ07EwGmhDe4y0ugTe2sifdzErIzPgtO5Aj1g$

On Thu, May 9, 2024, 12:31 AM M Bernt @.***> wrote:

https://galaxy.pasteur.fr/root?tool_id=toolshed.pasteur.fr/repos/dcorreia/bmge/bmge/1.12_1 https://urldefense.com/v3/__https://galaxy.pasteur.fr/root?tool_id=toolshed.pasteur.fr*repos*dcorreia*bmge*bmge*1.12_1__;Ly8vLy8!!PvDODwlR4mBZyAb0!RfzJnP__rGgF1tY9nIBpacJJFsE7tmMqqa4aYL7CDAARFlthjYg3ZnTurEmRy4wRhEFgIy9HDptqQUo-2-84bM5heQ$

Would be good to know if they have a github. They're are a few things that could be improved.

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