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galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission
https://galaxyproject.org/iuc
MIT License
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Tool Request: Plugin: Adding nonsense mediated decay (NMD) plugin to ensembl_vep #6122

Open prao123 opened 3 months ago

prao123 commented 3 months ago

Hello, I wanted to check if a plugin for ensembl_vep tool (already in Galaxy) could be added to te tool: nmd or nonsense mediated decay which predicts whether a transcript escapes the nonsense mediated decay process. Would be a good addition for filtering variants (InDels, Fusions, splice variants). https://github.com/Ensembl/VEP_plugins/blob/release/112/NMD.pm

Thanks

prao123 commented 3 months ago

Bumping this request for visibility. I can try and help in any way (testing vcf files, etc).