Updating tb-profiler to 6.4.0

[emarinier]

FOR CONTRIBUTOR:

• [x] I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• [x] License permits unrestricted use (educational + commercial)
• [ ] This PR adds a new tool or tool collection
• [x] This PR updates an existing tool or tool collection
• [ ] This PR does something else (explain below)

Related to https://github.com/galaxyproject/tools-iuc/pull/5139

[emarinier]

Testing error appears to be:

[E::hts_open_format] Failed to open file "vcf/tbprofiler.targets.vcf.gz" : No such file or directory
Failed to read from vcf/tbprofiler.targets.vcf.gz: No such file or directory

and possibly:

[19:57:03] INFO     Running delly                                      bam.py:84
           ERROR    delly: error while loading shared libraries:    utils.py:534
                    libboost_iostreams.so.1.85.0: cannot open                   
                    shared object file: No such file or directory               

           ERROR    Delly failed, skipping                             bam.py:96

The delly-related error doesn't appear when run locally with planemo serve. However, it seems like a similar error has happened before for others with tb-profiler: https://github.com/jodyphelan/TBProfiler/issues/88

[emarinier]

The solution appears to be fixing the version of delly:

<requirements>
    <requirement type="package" version="1.2.6">delly</requirement>
    <requirement type="package" version="@TOOL_VERSION@">tb-profiler</requirement>
</requirements>

See these issues for some more information:

https://github.com/jodyphelan/TBProfiler/issues/393#issuecomment-2452076859 https://github.com/jodyphelan/TBProfiler/issues/371#issuecomment-2197716747

[bgruening]

@pvanheus do you want to have a look?

@emarinier thanks a lot

[bgruening]

Thanks @emarinier