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galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission
https://galaxyproject.org/iuc
MIT License
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New tool Addition: Panaroo #6581

Open SaimMomin12 opened 1 day ago

SaimMomin12 commented 1 day ago

One of our bachelor students at the University of Freiburg (as a part of his Bachelor Project), is currently working on integrating the Panaroo tool into Galaxy. While a pull request (PR) has not yet been created, we will submit an official PR once the tool is ready for review. Our target is to have the tool available by early January next year.

wm75 commented 1 day ago

For reference:

bioconda recipe: https://github.com/bioconda/bioconda-recipes/blob/master/recipes/panaroo/meta.yaml original publication: https://doi.org/10.1186/s13059-020-02090-4 publication comparing pangenome tools like Roary, Panaroo and PanTa: https://doi.org/10.1186/s13059-024-03362-z

wm75 commented 1 day ago

PanTa - https://github.com/amromics/panta - might be another interesting tool by itself since it seems to be even more efficient than Panaroo.

wm75 commented 1 day ago

Interesting: there is https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo Why is this AU-specific?