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galaxyproject / training-material

A collection of Galaxy-related training material
https://training.galaxyproject.org
MIT License
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Sharing work on COVID19-related tutorials #1863

Open wm75 opened 4 years ago

wm75 commented 4 years ago

If you're interested in writing/contributing to tutorials related to https://covid19.galaxyproject.org/, feel free to add your name and the kind of tutorial you would like to contribute here. The idea is to come up with a bunch of separate tutorials teaching people the various analysis techniques employed on the covid19 site using some of that same input data.

For a start I'm already adding myself and a few people from Galaxy EU. Note: ticked off boxes do NOT mean that you cannot contribute to these topics. They only indicate that at least one person is volunteering to do work on them. Double assignments are welcome :)

simonbray commented 4 years ago

Made a start on the docking tutorial here: https://github.com/galaxyproject/training-material/pull/1864

bgruening commented 4 years ago

@simonbray merged and online here: https://training.galaxyproject.org/training-material/topics/computational-chemistry/tutorials/covid19-docking/tutorial.html

wm75 commented 4 years ago

Preprocessing and Assembly now covered by https://training.galaxyproject.org/training-material/topics/assembly/tutorials/assembly-with-preprocessing/tutorial.html

esraaa commented 4 years ago

during running Protein-ligand docking tutorial, using the same examples but at this function always have an error (Search ChEMBL database) the error is : 0.00 USD This job requested 1 cores and 6.0 Gb. Given this, the smallest EC2 machine we could find is m3.large (7.5 GB / 2 vCPUs / Intel Xeon E5-2670 v2 (Ivy Bridge/Sandy Bridge)). That instance is priced at 0.158 USD/hour. what shall i do?

simonbray commented 4 years ago

@esraaa, can you submit a bug report? You can see an insect symbol on the errored job for this.

Will reply to you there, this page is for a different discussion.

esraaa commented 4 years ago

ok i will,sorry for that

From: Simon Bray notifications@github.com Sent: Friday, April 24, 2020 2:12 PM To: galaxyproject/training-material training-material@noreply.github.com Cc: esraa bioeng_esraa@hotmail.com; Mention mention@noreply.github.com Subject: Re: [galaxyproject/training-material] Sharing work on COVID19-related tutorials (#1863)

@esraaahttps://github.com/esraaa, can you submit a bug report? You can see an insect symbol on the errored job for this.

Will reply to you there, this page is for a different discussion.

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