From Tutorial feedback- snpEff version 4.1.0 not found

[otatadeabigail]

Link to the tutorial is below. Under the sub-heading "Identifying Candidate Mutations: Variant annotation." The version of the SnpEff tool required for the Hand-on is 4.1.0. I tried my hands on the tutorial too, I used the version button as suggested in the tutorial but only found version 4.3 https://training.galaxyproject.org/training-material/topics/variant-analysis/tutorials/mapping-by-sequencing/tutorial.html

[shiltemann]

Thank @otatadeabigail :) Which Galaxy server were you using? Each Galaxy will have a different set of tool and versions installed. Perhaps the tutorial can be updated to work with a newer version of SnpEff.

[wm75]

@otatadeabigail thanks for bringing this up. I just checked on the two largest public instances, usegalaxy.org and usegalaxy.eu. While the latter has the right version installed, usegalaxy.org, for some reason, seems to have deinstalled any older versions of SnpEff (maybe to avoid confusion for users). As the original author of that tutorial I will check how things can be rewritten to work with the latest version of SnpEff.

[otatadeabigail]

@shiltemann I used usegalaxy.org(main) as it was one of the instances recommended in the tutorial.

[otatadeabigail]

@wm75 that's right. Thank you