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galaxyproject / training-material

A collection of Galaxy-related training material
https://training.galaxyproject.org
MIT License
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Creation of Diversity tutorial #4282

Open Sophia120199 opened 10 months ago

Sophia120199 commented 10 months ago

Hi, so this is the draft of a tutorial on how to calculate alpha and beta diversity, I'm looking forward to the review feedback :)

There are still some unsolved issues:

  1. I didn't understand how to interpret the results of the fisher's alpha index calculated by krakentools, so the explanation for this is still missing
  2. the zenodo files with the bracken output as starter input files for the tutorial still need to be created
  3. somehow in the detail box on renyie entropy, the mathematical expression is already visible, when the box is not opened yet, I don't know why
  4. in the preview website, the mathematical expressions of the alpha diversity are not shown correctly since I added the $$ signs
shiltemann commented 4 months ago

Hi @Sophia120199! Thanks a lot for your tutorial! Just wanted to let you know that we renamed the metagenomics topic to "microbiome", so I have also changed this in your PR. So please update your local branch to pull in these changes before adding more edits :)

bebatut commented 4 months ago

@Sophia120199 is not working with us anymore @paulzierep could you have a look at this PR and see if more changes are needed to merge it? Thanks a lot

paulzierep commented 3 months ago

sorry I missed that completely, will try to review in the next days ...

paulzierep commented 3 weeks ago

Still need to review this, will try my best !