Data on Zenodo

[bebatut]

Some tutorials does not have a link to data on Zenodo in the metadata file:

• Introduction:
  • [x] Galaxy 101
  • [x] Introduction to Genomics and Galaxy
  • [x] Extracting Workflows from Histories"
  • [x] Multisample Analysis
  • [x] Options for using Galaxy
  • [ ] IGV Introduction
  • [ ] Visualization
  • [ ] Getting data into Galaxy
  • [ ] Collections
  • [ ] Understanding Galaxy history system
  • [ ] Using dataset collection
  • [ ] NGS data logistics
• Proteomics
  • [ ] Protein FASTA Database Handling
  • [ ] Label-free versus Labelled - How to Choose Your Quantitation Method
  • [ ] Detection and quantitation of N-termini (degradomics) via N-TAILS
  • [x] Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
• Sequence analysis
  • [x] Quality Control
  • [x] Mapping
  • [x] RAD-Seq Reference-based data analysis
  • [x] RAD-Seq de-novo data analysis
  • [x] RAD-Seq to construct genetic maps
• Genome annotation
  • [x] Genome Annotation
  • [x] Genome Annotation with Prokka
• Transcriptomics
  • [ ] Reference-based RNAseq data analysis (long)

• Variant analysis

  • [ ] Variant calling: Diploid case
  • [x] Calling variants in non-diploid systems
  • [ ] Calling variants in diploid systems
  • [ ] Calling very rare variants

  We should probably put them there

[bgruening]

@nekrut @jennaj do you have someone that can do this. Its a little bit about giving credits as you can put authors next to the data.

[andrewjpage]

Zenodo links added for:

Sequence analysis Quality Control Mapping Genome Annotation RAD-Seq Reference-based data analysis RAD-Seq de-novo data analysis RAD-Seq to construct genetic maps Genome annotation with Prokka

Variant analysis Calling variants in non-diploid systems

[bgruening]

• Protein FASTA Database Handling
• Label-free versus Labelled - How to Choose Your Quantitation Method
• Detection and quantitation of N-termini (degradomics) via N-TAILS

Do not need a zenodo link afaik.

[bebatut]

All the enabled tutorials needing input data have the datasets on Zenodo. If not, feel free to reopen this issue