Errored links

[willdurand]

Here is another batch of dead-ish links:

- ./_site/training-material/index.html
  *  External link https://www.psu.edu/ failed: response code 0 means something's wrong.
             It's possible libcurl couldn't connect to the server or perhaps the request timed out.
             Sometimes, making too many requests at once also breaks things.
             Either way, the return message (if any) from the server is: Couldn't connect to server
- ./_site/training-material/topics/assembly/index.html
  *  External link http://genome.cshlp.org/content/18/5/821.full failed: 302 Peer certificate cannot be authenticated with given CA certificates
- ./_site/training-material/topics/chip-seq/index.html
  *  External link http://genome.cshlp.org/content/22/9/1813.long failed: 302 Peer certificate cannot be authenticated with given CA certificates
- ./_site/training-material/topics/chip-seq/tutorials/tal1-binding-site-identification/tutorial.html
  *  External link http://genome.cshlp.org/content/24/12/1945.full.pdf+html failed: 302 Peer certificate cannot be authenticated with given CA certificates
- ./_site/training-material/topics/introduction/tutorials/galaxy-intro-ngs-data-managment/tutorial.html
  *  External link https://www.bx.psu.edu/~anton/share/ng_test_data/var/raw_mother-ds-1.fq.gz failed: 404 No error
  *  External link https://www.bx.psu.edu/~anton/share/ng_test_data/var/raw_mother-ds-2.fq.gz failed: 404 No error
- ./_site/training-material/topics/metagenomics/tutorials/mothur-miseq-sop/tutorial.html
  *  External link https://doi.org/10.1080/STA-200066418 failed: got a time out (response code 303)
- ./_site/training-material/topics/proteomics/tutorials/protein-id-oms/tutorial.html
  *  External link http://genesis.ugent.be/files/costore/practicals/bioinformatics-for-proteomics/1-Peptide-and-Protein-Identification/1.2-Peak-List-Generation/1.2-Peak-List-Generation.pdf failed: 403 No error
- ./_site/training-material/topics/sequence-analysis/index.html
  *  External link http://genome.cshlp.org/content/15/11/1566.abstract failed: 302 Peer certificate cannot be authenticated with given CA certificates
- ./_site/training-material/topics/sequence-analysis/tutorials/genetic-map-rad-seq/tutorial.html
  *  External link http://catchenlab.life.illinois.edu/stacks/tut_gar.php failed: 404 No error
  *  External link https://creskolab.uoregon.edu/stacks/tutorial/stacks_samples.tar.gz failed: 404 No error
- ./_site/training-material/topics/transcriptomics/tutorials/de-novo/tutorial.html
  *  External link http://genome.cshlp.org/content/early/2014/10/12/gr.164830.113.abstract failed: 302 Peer certificate cannot be authenticated with given CA certificates
- ./_site/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html
  *  External link http://genome.cshlp.org/content/21/2/193.long failed: 302 Peer certificate cannot be authenticated with given CA certificates
- ./_site/training-material/topics/variant-analysis/tutorials/non-dip/tutorial.html
  *  External link https://www.bx.psu.edu/~anton/share/ng_test_data/bmmb554/hw4/f.fq.gz failed: 404 No error
  *  External link https://www.bx.psu.edu/~anton/share/ng_test_data/bmmb554/hw4/phix.fa failed: 404 No error
  *  External link https://www.bx.psu.edu/~anton/share/ng_test_data/bmmb554/hw4/r.fq.gz failed: 404 No error

Since no one really cares, I'd suggest we dont fail the build for htmlproofer because we get things merged anyway and it is not nice to always have red CI statuses. Maybe we could enable email notifications for these jobs, or setup a CRON job once a week with notifications enabled.

[bebatut]

I planned to look at them today... trying to understand why are they failing

[nsoranzo]

http://genome.cshlp.org/ links seem to redirect to https

Ping @nekrut for the links inside his lab website.

https://www.psu.edu/ is not working, we should use http://

[bebatut]

We fixed the previous errored links.

But we have new errors with https://www.france-bioinformatique.fr/:

It's possible libcurl couldn't connect to the server or perhaps the request timed out.
Sometimes, making too many requests at once also breaks things.
Either way, the return message (if any) from the server is: Peer certificate cannot be authenticated with given CA certificates

Any idea how to fix this one?