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galaxyproject / usegalaxy-tools

usegalaxy.* common tools
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Correct configuration for anndata_import 0.10.3+galaxy0 #749

Open jennaj opened 6 months ago

jennaj commented 6 months ago

This looks like a typo in the config

toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.3+galaxy0

native_specification --nodes=1 --ntasks=1 --mem=277 --time=36:00:00 --partition=normal

jennaj commented 6 months ago

Odd .. prior tool version runs fine. Everything was sent to the same cluster with same specs.

toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy1

This impacts a tutorial.

jennaj commented 6 months ago

Still fails immediately, even on a 92.6 KB h5 file

https://usegalaxy.org/u/jen-galaxyproject/h/test-export-anndata-and-loom-files-h5ad

toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.3+galaxy0 bbd44e69cb8906b548c18b7e6744fe12 (58112973)