Install more krakentools tools at ORG to support tutorials and synch up servers

[jennaj]

Please install

priority

• [ ] toolshed.g2.bx.psu.edu/repos/iuc/krakentools_extract_kraken_reads/krakentools_extract_kraken_reads/1.2+galaxy1

others

• [ ] toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2mpa/krakentools_kreport2mpa/1.2+galaxy1
• [ ] toolshed.g2.bx.psu.edu/repos/iuc/krakentools_beta_diversity/krakentools_beta_diversity/1.2+galaxy1
• [ ] toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1
• [ ] toolshed.g2.bx.psu.edu/repos/iuc/krakentools_combine_kreports/krakentools_combine_kreports/1.2+galaxy1

Listing at ORG

Listing at EU

Listing at AU

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Reported by Frederick Tan XRef https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/workflows/. More tools are missing to fully support these but the tools above are a start.

[mvdbeek]

I've added them here: https://github.com/galaxyproject/usegalaxy-tools/pull/780

The procedure is really straightforward, anyone can learn this. It is probably less work than opening this issue if you get familiar with the process.

1. Open the file for the section you want to add, e.g https://github.com/galaxyproject/usegalaxy-tools/blob/master/usegalaxy.org/metagenomic_analysis.yml
2. Add the repositories as I did in the PR. If you have the tool id, the owner comes after /repos/ in the id, and that's followed by the name.
3. run make-fix
4. commit and create PR