Update all repos 2024-08-12

[github-actions[bot]]

Automated changes by create-pull-request GitHub action

[mvdbeek]

@galaxybot deploy this

[mvdbeek]

@galaxybot deploy this

[mvdbeek]

Ugh, missing shed_tool_conf.xml entries. Wonder if we're being bitten by tighter test case validation in dev.

[mvdbeek]

It's https://bugzilla.redhat.com/show_bug.cgi?id=2299346:

sqlite> select * from tool_shed_repository where changeset_revision = 'f234e2e59d76';
4966|2024-08-12 09:24:49.296685|2024-08-12 09:24:49.607309|toolshed.g2.bx.psu.edu|plotly_ml_performance_plots|performance plots for machine learning problems|bgruening|f234e2e59d76|0|{}|0|f234e2e59d76|0|0|4|Error|Error cloning repository: Command '['hg', 'clone', '--stream', '-r', '4', 'https://toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots', '/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/f234e2e59d76/plotly_ml_performance_plots']' returned non-zero exit status 1.
Output was:
Traceback (most recent call last):
  File "/galaxy/server/.venv/bin/hg", line 57, in <module>
    from mercurial import dispatch
  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
  File "/galaxy/server/.venv/lib/python3.12/site-packages/hgdemandimport/demandimportpy3.py", line 52, in exec_module
    super().exec_module(module)
  File "<frozen importlib.util>", line 257, in exec_module
  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
  File "/galaxy/server/.venv/lib/python3.12/site-packages/hgdemandimport/demandimportpy3.py", line 52, in exec_module
    super().exec_module(module)
  File "<frozen importlib.util>", line 267, in exec_module
AttributeError: partially initialized module 'threading' has no attribute 'RLock' (most likely due to a circular import)