updating to latest version of ncbi-egapx

[richard-burhans]

TODO: Please replace this header with a description of your pull request.

Installation sequence for tool-installers

• [x] Test using @galaxybot test this
• [ ] Inspect CI output for expected changes
• [ ] Deploy using @galaxybot deploy this if test install was successful
• [ ] Merge this PR

[richard-burhans]

@galaxybot test this

[martenson]

@galaxybot test this

[martenson]

shed_tools diff is empty, something is wrong

[mvdbeek]

Update without version bump, you can tell by 7c72d5c7e449 being modified, which is not the new revision.

[martenson]

except there should be one https://github.com/richard-burhans/galaxytools/commit/f47ba0b127d52901402fe9f830a0095c6f8fa36a

[mvdbeek]

https://github.com/richard-burhans/galaxytools/actions/runs/10799704747/job/29956466322

[mvdbeek]

(Missing the all_fasta.loc.sample file)

[martenson]

the subsequent MTS deploy CI ran fine (https://github.com/richard-burhans/galaxytools/actions/runs/10800498795) and the MTS version on tip bf80a7ed8595 has the increased version and the .loc.sample file

[mvdbeek]

The repo files are missing all_fasta.loc.sample, I don't think this can work. I don't know why the tool shed has accepted this ?

[martenson]

The tip has the .loc.sample but the previous MTS revision does not, and between those two there is no version bump. So version bump should ideally fix this.

[mvdbeek]

I always thought they need to be in the same directory?

[martenson]

I don't think that is mandatory or a standard

[richard-burhans]

FYI: I had accepted a pull request from @fubar2 (Ross Lazarus), but I didn't realize there was a new select param using from_data_table. I never created a tool_data_table_conf.xml.sample file and neither planemo lint nor planemo shed_lint noticed this error. I pushed to my fork, and the github actions were able to push the broken version to the toolshed. I realized this last night and tried pushing out an update with an updated version.

[martenson]

@galaxybot test this

[martenson]

@galaxybot deploy this