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galaxyproteomics / tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
MIT License
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SG updated to v4.0.41 && PeptideShaker updated to v2.0.33.1 #617

Closed CarlosHorro closed 3 years ago

CarlosHorro commented 3 years ago

SG: Last updates on SG application and Conda package have fixed diverse errors running DirectTag, MsAmanda, Myrimatch and OMSSA. Last MsAmanda versions are based on .NET Core, and some issues generating bundles with .NET Core 5 for macosx have caused errors leading to remove it from the Conda package for macosx until .NET Core 6 has been released. Many other minor updates.

PS: PeptideShaker bugfix managing searchgui files with different parameter name than the previously fixed one.

bgruening commented 3 years ago

@CarlosHorro should we wait for you other package?

CarlosHorro commented 3 years ago

@CarlosHorro should we wait for you other package?

Hi @bgruening , well, the metamorpheus test was failing because of an internal exception in current metamorpheus executable in the Conda package. I am still working on the last PR of the bioconda package, which already contains the bugfix, but I want to include there the MSAmanda bugfix too. When that Conda package is released and this tool uses it (and its tests passes ok), we can merge this PR...

bgruening commented 3 years ago

Wuhu!!!! Thanks for this amazing effort!