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galaxyproteomics / tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
MIT License
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bump eggnog #670

Closed bernt-matthias closed 2 years ago

bernt-matthias commented 2 years ago

user reported an error where eggnog reported that a diamond blastp call failed. when executing the failing call I get

diamond v2.0.11.149 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: No such file or directory
Error: Error opening temporary file /gpfs1/work/songalax/galaxy/database/jobs_directory/000/155/155782/working/emappertmp_dmdn_OnTm_q/diamond-tmp-i7fCqW

Release notes indicate that a tmpdir related bug was fixed:

https://github.com/eggnogdb/eggnog-mapper/releases

overall 2.1.7 and 2.1.8 seem to be a bugfix releases

bernt-matthias commented 2 years ago

Thanks for the approval. I just noticed that I messed up the VERSION_SUFFIX (now same as TOOL_VERSION). Should I fix it (e.g. set it to 3) and we skip deployment?