Closed ZimmerA closed 1 year ago
Oops, that was a bit premature 😄
The error looks real:
Job in error state.. tool_id: proteomiqon_psmstatistics, exit_code: 134, stderr: Unhandled exception. Newtonsoft.Json.JsonSerializationException: No union type found with the name 'LinearLogit'. Path '[0].PepValueFittingMethod.Case', line 15, position 52.
at Newtonsoft.Json.Converters.DiscriminatedUnionConverter.ReadJson(JsonReader reader, Type objectType, Object existingValue, JsonSerializer serializer)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.DeserializeConvertable(JsonConverter converter, JsonReader reader, Type objectType, Object existingValue)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.ResolvePropertyAndCreatorValues(JsonObjectContract contract, JsonProperty containerProperty, JsonReader reader, Type objectType)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateObjectUsingCreatorWithParameters(JsonReader reader, JsonObjectContract contract, JsonProperty containerProperty, ObjectConstructor`1 creator, String id)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateNewObject(JsonReader reader, JsonObjectContract objectContract, JsonProperty containerMember, JsonProperty containerProperty, String id, Boolean& createdFromNonDefaultCreator)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateObject(JsonReader reader, Type objectType, JsonContract contract, JsonProperty member, JsonContainerContract containerContract, JsonProperty containerMember, Object existingValue)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateValueInternal(JsonReader reader, Type objectType, JsonContract contract, JsonProperty member, JsonContainerContract containerContract, JsonProperty containerMember, Object existingValue)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.Deserialize(JsonReader reader, Type objectType, Boolean checkAdditionalContent)
at Newtonsoft.Json.Serialization.JsonSerializerProxy.DeserializeInternal(JsonReader reader, Type objectType)
at Newtonsoft.Json.JsonSerializer.Deserialize(JsonReader reader, Type objectType)
at Newtonsoft.Json.Linq.JToken.ToObject(Type objectType, JsonSerializer jsonSerializer)
at Newtonsoft.Json.Converters.DiscriminatedUnionConverter.ReadJson(JsonReader reader, Type objectType, Object existingValue, JsonSerializer serializer)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.DeserializeConvertable(JsonConverter converter, JsonReader reader, Type objectType, Object existingValue)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.ResolvePropertyAndCreatorValues(JsonObjectContract contract, JsonProperty containerProperty, JsonReader reader, Type objectType)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateObjectUsingCreatorWithParameters(JsonReader reader, JsonObjectContract contract, JsonProperty containerProperty, ObjectConstructor`1 creator, String id)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateNewObject(JsonReader reader, JsonObjectContract objectContract, JsonProperty containerMember, JsonProperty containerProperty, String id, Boolean& createdFromNonDefaultCreator)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateObject(JsonReader reader, Type objectType, JsonContract contract, JsonProperty member, JsonContainerContract containerContract, JsonProperty containerMember, Object existingValue)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.CreateValueInternal(JsonReader reader, Type objectType, JsonContract contract, JsonProperty member, JsonContainerContract containerContract, JsonProperty containerMember, Object existingValue)
at Newtonsoft.Json.Serialization.JsonSerializerInternalReader.Deserialize(JsonReader reader, Type objectType, Boolean checkAdditionalContent)
at Newtonsoft.Json.JsonSerializer.DeserializeInternal(JsonReader reader, Type objectType)
at Newtonsoft.Json.JsonSerializer.Deserialize(JsonReader reader, Type objectType)
at Newtonsoft.Json.JsonConvert.DeserializeObject(String value, Type type, JsonSerializerSettings settings)
at Newtonsoft.Json.JsonConvert.DeserializeObject[T](String value, JsonSerializerSettings settings)
at Newtonsoft.Json.JsonConvert.DeserializeObject[T](String value)
at ProteomIQon.Json.ReadAndDeserialize[a](String path) in C:\Users\jonat\source\repos\ProteomIQon\src\ProteomIQon\Json.fs:line 20
at ProteomIQon.console1.main(String[] argv) in C:\Users\jonat\source\repos\ProteomIQon\src\PSMStatistics\Program.fs:line 35
/usr/local/bin/proteomiqon-psmstatistics: line 2: 16 Aborted (core dumped) dotnet $CONDA_PREFIX/lib/dotnet/tools/PSMStatistics/ProteomIQon.PSMStatistics.dll "$@"
.
Indeed, I'll take a look
@bgruening Apparently a parameter was renamed which I didn't know about 😄
And a wrong parameter yield to such a stack trace and a coredump? Holy moly :)
This PR updates proteomiqon_psmstatistics to version 0.0.8