added invocation options; improved report; fixed defects; etc

galaxyproteomics / tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

MIT License

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added invocation options; improved report; fixed defects; etc #684

Closed eschen42 closed 2 years ago

eschen42 commented 2 years ago

Yes, @bgruening, I have been working on this since July! I look forward to any feedback that you can provide. Thank you.

eschen42 commented 2 years ago

From my post on gitter that I tried to paste into my commit message ...

So, GitHub decided to rename master to main. I didn't think that would be a problem, but my R lint-on-checkin says:
Error: Unable to resolve action `r-lib/actions/setup-r@master`, unable to find version `master`
Apparently, I am not the only one affected by this: https://github.com/carpentries/styles/issues/641 says to update it to r-lib/actions/setup-r@v2

eschen42 commented 2 years ago

@bgruening Ready for review. I don't recall how to mark the PR as "review requested".