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galaxyproteomics / tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
MIT License
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fixed case of mzxml and mzml in maxquant_mqpar tool #689

Closed eschen42 closed 1 year ago

eschen42 commented 1 year ago

In July, we missed the case in the file-type for mzxml for the maxquant_mqpar tool (we only fixed maxquant). Consequently, the workflow editor won't allow connections to this input for mzxml files.

eschen42 commented 1 year ago

@bgruening This test failure is puzzling. Here's what I get testing with --biocontainers on my own machine:

Testing complete. HTML report is in "/home/art/galaxy/thor/src/tools-galaxyp_xml/tools/maxquant/tool_test_output.html".
All 11 test(s) executed passed.
maxquant (Test #1): passed
maxquant (Test #2): passed
maxquant (Test #3): passed
maxquant (Test #4): passed
maxquant (Test #5): passed
maxquant (Test #6): passed
maxquant (Test #7): passed
maxquant (Test #8): passed
maxquant (Test #9): passed
maxquant (Test #10): passed
maxquant_mqpar (Test #1): passed
bgruening commented 1 year ago

Its crashing for me locally as well. Which is not good and I'm wondering why ...

bgruening commented 1 year ago

I'm getting this error in a file: Failed to initialize CoreCLR, HRESULT: 0x80004005 does this ring any bell?