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galaxyproteomics / tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
MIT License
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Failed to generate the output for 07 test-data #707

Open mthang opened 1 year ago

mthang commented 1 year ago

All the test-data works except the 07 test-data. The maxquant wrapper failed at 07 test-data while testing using planemo. Any idea? https://github.com/galaxyproteomics/tools-galaxyp/blob/f1e1cd260ef2884d0ba12e2b614df3c72d0934dc/tools/maxquant/maxquant.xml#L939

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bernt-matthias commented 1 year ago

What is the failure? Do you test with --biocontainers?

mthang commented 1 year ago

@bernt-matthias I can share the tool_test_output.html with you if you want. I have tested the maxquant.xml wrapper with planemo test --biocontainers and all tests failed. I cloned the latest tools-galaxyp repo and replaced the maxquant.xml and the macros.xml with my maxquant.xml and macros.xml. One of the issues that I can think of is the maxquant version ( old - 1.6.17 and my version is 2.0.3). In the macros.xml, I also included the dotnet package, but that's not in the original maxquant.xml . Therefore, I tested the maxquant.xml using planemot test --update_test_data --galaxy_root=/path/to/local/galaxy maxquant.xml , and it passed all the tests.