Convert FeatureXML to peak table

galaxyproteomics / tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

MIT License

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Convert FeatureXML to peak table #735

Open hechth opened 7 months ago

hechth commented 7 months ago

Would be great if it were possible to convert a featureXML file from OpenMS to a table with 3 columns mz, rt and area to make it compatible with the recetox tools and other W4M infrastructure.

@bernt-matthias

bernt-matthias commented 7 months ago

OpenMS discord channel suggested to use:

FileConverter with EDTA as output or
TextExporter (with a lot of additional information).

hechth commented 4 months ago

I'll check those tools and we can see :)