Open cat-bro opened 4 months ago
Jep, bug. Its hardcoded here: https://github.com/galaxyproteomics/tools-galaxyp/blob/3ff8be11f0be7b9ea486577896ded0a806d9d7ee/tools/openms/MSFraggerAdapter.xml#L70
If one wants to use it the best idea would be yo change this to the tool directory and put the jar there.
Better solution is coming in here: https://github.com/bioconda/bioconda-recipes/pull/45127
ping @bernt-matthias
A Galaxy Australia user sent a report of MS Fragger Adapter failing with this stdout
This looks like a bug but maybe it isn't - is this a path that would exist within a container?