Hello,
I am having such a problem with MaxDIA, adjusting the number of threads does not work, how can I solve this problem?
The detailed warning information is as follows
Configuring
Assemble run info
Finish run info
Testing fasta files
Preparing searches
Generate libraries
Feature detection
Deisotoping
Parse libraries
Create slice data
Delete intermediate files1
DIA library search1
at QueueingSystem.WorkDispatcher.ProcessSingleRunExternalProcess (System.Int32 taskIndex, System.Int32 threadIndex) [0x0009d] in :0
at QueueingSystem.WorkDispatcher.DoWork (System.Int32 taskIndex, System.Int32 threadIndex) [0x0001e] in :0
at QueueingSystem.WorkDispatcher.Work (System.Object threadIndex) [0x00054] in :0
at System.Threading.ThreadHelper.ThreadStart_Context (System.Object state) [0x00025] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ExecutionContext.RunInternal (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00071] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00000] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state) [0x0002b] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ThreadHelper.ThreadStart (System.Object obj) [0x0000f] in <7cd4deb8302a478d9d393f24754841da>:0
[ERROR] FATAL UNHANDLED EXCEPTION: System.Exception: Exception during execution of external process: 1311852
Hello, I am having such a problem with MaxDIA, adjusting the number of threads does not work, how can I solve this problem? The detailed warning information is as follows
Configuring Assemble run info Finish run info Testing fasta files Preparing searches Generate libraries Feature detection Deisotoping Parse libraries Create slice data Delete intermediate files1 DIA library search1
Unhandled Exception: System.Exception: Exception during execution of external process: 1311852 Unhandled Exception: System.IndexOutOfRangeException: Index was outside the bounds of the array. at MaxQuantLibS.Domains.Peptides.Dia.Data.FragmentMassCalculator.CalcFragMasses (MsLib.Fragment.FragmentType fragmentType) [0x00052] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData.GetMsmsMasses (MsLib.Fragment.FragmentType[] fts, System.String sequence, BaseLibS.Mol.PeptideModificationState mods, BaseLibS.Mol.Modification[] fixedMods) [0x00018] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibrary.StreamLib (System.IO.BinaryReader reader, System.Boolean isTims, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 libInd, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func:0
at MaxQuantTaskCore.Program.Main (System.String[] args) [0x00007] in <84143ecaa91a4c99adeae8279689607c>:0
[ERROR] FATAL UNHANDLED EXCEPTION: System.IndexOutOfRangeException: Index was outside the bounds of the array.
at MaxQuantLibS.Domains.Peptides.Dia.Data.FragmentMassCalculator.CalcFragMasses (MsLib.Fragment.FragmentType fragmentType) [0x00052] in <2ccc08da14d74cffaf694e9e9a94f21e>:0
at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData.GetMsmsMasses (MsLib.Fragment.FragmentType[] fts, System.String sequence, BaseLibS.Mol.PeptideModificationState mods, BaseLibS.Mol.Modification[] fixedMods) [0x00018] in <2ccc08da14d74cffaf694e9e9a94f21e>:0
at MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibrary.StreamLib (System.IO.BinaryReader reader, System.Boolean isTims, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 libInd, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func:0
at MaxQuantTaskCore.Program.Main (System.String[] args) [0x00007] in <84143ecaa91a4c99adeae8279689607c>:0
2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.Double[] precMasses, System.Double[] precLogIntensities, System.Boolean[] precHasIso, System.Int16[] precLabelInds, System.Double[] fragMasses, System.Double[] fragLogIntensities, System.Boolean[] fragHasIso, System.Collections.Generic.List1[T] result, System.Collections.Generic.List1[MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibraryMatch][] result2, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Util.Responder responder, System.Int32 scoreN, System.Int32 irange, System.Boolean hardRtFilter, BaseLibS.Api.SequenceClassificationModel precModel, BaseLibS.Api.SequenceClassificationModel fragModel, BaseLibS.Api.SequenceClassificationModel chargeModel, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32 labelIndForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction) [0x001b2] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceDataLibs.StreamLibs (System.IO.BinaryReader reader, System.Boolean isTims, BaseLibS.Mol.Modification[][] fixedMods, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.Double[] precMasses, System.Double[] precLogIntensities, System.Boolean[] precHasIso, System.Int16[] precLabelInds, System.Double[] fragMasses, System.Double[] fragLogIntensities, System.Boolean[] fragHasIso, System.Collections.Generic.List1[T] result, System.Collections.Generic.List1[MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibraryMatch][] result2, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Util.Responder responder, System.Int32 scoreN, System.Int32 irange, System.Boolean hardRtFilter, BaseLibS.Api.SequenceClassificationModel precModel, BaseLibS.Api.SequenceClassificationModel fragModel, BaseLibS.Api.SequenceClassificationModel chargeModel, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs) [0x00024] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaDataFactory.StreamLibs (System.String posLayerBasePath, System.Int32 irange, System.Boolean isTims, BaseLibS.Mol.Modification[][] fixedMods, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.Double[] precMasses, System.Double[] precLogIntensities, System.Boolean[] precHasIso, System.Int16[] precLabelInds, System.Double[] fragMasses, System.Double[] fragLogIntensities, System.Boolean[] fragHasIso, System.Collections.Generic.List1[T] result, System.Collections.Generic.List1[MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibraryMatch][] result2, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Util.Responder responder, System.Int32 scoreN, System.Boolean hardRtFilter, BaseLibS.Api.SequenceClassificationModel precModel, BaseLibS.Api.SequenceClassificationModel fragModel, BaseLibS.Api.SequenceClassificationModel chargeModel, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs) [0x000ab] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData.FindInitialMatches (MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.String path, System.Int32 irange, BaseLibS.Util.Responder responder, System.Int32 ii, System.Int32 nn, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, System.Int32 round, System.Int32 scoreN, System.Boolean hardRtFilter, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs) [0x00170] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData.FindBestMatches (MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 minOverlap, System.Double minPrecursorScore, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, BaseLibS.Ms.DiaFeatureQuantMethod featureQuantMethod, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.String path, System.Int32 i, System.Int32 round, BaseLibS.Util.Responder responder, System.Int32 ii, System.Int32 nranges, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, System.Int32 scoreN, System.Boolean hardRtFilter, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs, System.Boolean diaSecondScoreForMultiplex) [0x00014] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.Work (System.Int32 nranges, System.Int32 ii, System.Int32[] p, System.Collections.Generic.HashSet1[T] validRanges, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion1, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double precMassTolPpm, System.Double fragMassTolPpm, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion1, System.Double minScore, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, BaseLibS.Mol.Modification[][] fixedMods, System.String path, MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 round, BaseLibS.Util.Responder responder, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, System.Int32 scoreN, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction) [0x001a4] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.FindBestMatches (System.Int32 nranges, System.Collections.Generic.HashSet1[T] validRanges, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion1, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double precMassTolPpm, System.Double fragMassTolPpm, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion1, System.Double minScore, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 nthreads, System.String path, MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 round, System.Int32 fileIndex, BaseLibS.Util.Responder responder, System.Boolean hasAdaptiveMlScoring, System.Int32 scoreN, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, BaseLibS.Api.SequenceRegressionModel rtModel) [0x00278] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.DataSimple.LibraryDiaSimple.ProcessImpl1 (MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Int32 nthreads, System.Int32 nranges, System.Int32 nlibs, System.String basePath, BaseLibS.Mol.Modification[][] fixedMods, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, System.Double recalNwindowsMass1, System.Int32 fileIndex, BaseLibS.Util.Responder responder, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist) [0x0005a] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.ProcessLibraryDia1 (MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Int32 nthreads, MaxQuantLibS.Domains.Peptides.Data.GenericRun run, System.Int32 nranges, System.String basePath, System.Int32 fileIndex, BaseLibS.Util.Responder responder) [0x00108] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.Process1 (System.String mqparFile, System.Int32 fileIndex, System.Int32 nthreads, BaseLibS.Util.Responder responder, System.Int32 batchBegin, System.Int32 batchEnd) [0x0006e] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Work.DiaLibrarySearch1.Calculation (System.String[] args, BaseLibS.Util.Responder responder) [0x00025] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Work.MaxQuantWorkDispatcherUtil.PerformTask (System.Int32 taskType, System.String[] args, BaseLibS.Util.Responder responder) [0x00007] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Base.MaxQuantUtils.Run (System.Int32 softwareId, System.Int32 taskType, System.String[] args, BaseLibS.Util.Responder responder) [0x0003e] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantTaskCore.Program.Function (System.String[] args, BaseLibS.Util.Responder responder) [0x0001c] in <84143ecaa91a4c99adeae8279689607c>:0 at Utils.Util.ExternalProcess.Run (System.String[] args, System.Boolean debug) [0x00148] in2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.Double[] precMasses, System.Double[] precLogIntensities, System.Boolean[] precHasIso, System.Int16[] precLabelInds, System.Double[] fragMasses, System.Double[] fragLogIntensities, System.Boolean[] fragHasIso, System.Collections.Generic.List1[T] result, System.Collections.Generic.List1[MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibraryMatch][] result2, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Util.Responder responder, System.Int32 scoreN, System.Int32 irange, System.Boolean hardRtFilter, BaseLibS.Api.SequenceClassificationModel precModel, BaseLibS.Api.SequenceClassificationModel fragModel, BaseLibS.Api.SequenceClassificationModel chargeModel, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32 labelIndForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction) [0x001b2] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceDataLibs.StreamLibs (System.IO.BinaryReader reader, System.Boolean isTims, BaseLibS.Mol.Modification[][] fixedMods, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.Double[] precMasses, System.Double[] precLogIntensities, System.Boolean[] precHasIso, System.Int16[] precLabelInds, System.Double[] fragMasses, System.Double[] fragLogIntensities, System.Boolean[] fragHasIso, System.Collections.Generic.List1[T] result, System.Collections.Generic.List1[MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibraryMatch][] result2, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Util.Responder responder, System.Int32 scoreN, System.Int32 irange, System.Boolean hardRtFilter, BaseLibS.Api.SequenceClassificationModel precModel, BaseLibS.Api.SequenceClassificationModel fragModel, BaseLibS.Api.SequenceClassificationModel chargeModel, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs) [0x00024] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaDataFactory.StreamLibs (System.String posLayerBasePath, System.Int32 irange, System.Boolean isTims, BaseLibS.Mol.Modification[][] fixedMods, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.Double[] precMasses, System.Double[] precLogIntensities, System.Boolean[] precHasIso, System.Int16[] precLabelInds, System.Double[] fragMasses, System.Double[] fragLogIntensities, System.Boolean[] fragHasIso, System.Collections.Generic.List1[T] result, System.Collections.Generic.List1[MaxQuantLibS.Domains.Peptides.Dia.Library.DiaLibraryMatch][] result2, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Util.Responder responder, System.Int32 scoreN, System.Boolean hardRtFilter, BaseLibS.Api.SequenceClassificationModel precModel, BaseLibS.Api.SequenceClassificationModel fragModel, BaseLibS.Api.SequenceClassificationModel chargeModel, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs) [0x000ab] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData.FindInitialMatches (MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 minOverlap, System.Double minPrecursorScore, System.Func2[T,TResult] ind2K0Inv, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.String path, System.Int32 irange, BaseLibS.Util.Responder responder, System.Int32 ii, System.Int32 nn, MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData data, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, System.Int32 round, System.Int32 scoreN, System.Boolean hardRtFilter, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs) [0x00170] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.DiaSliceData.FindBestMatches (MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double deltaMzPpmPrec, System.Double deltaMzPpmFrag, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion, System.Double minScore, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 minOverlap, System.Double minPrecursorScore, System.Boolean useProfileCorrelation, System.Double minPrecProfileCorrelation, System.Double minFragProfileCorrelation, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, BaseLibS.Ms.DiaFeatureQuantMethod featureQuantMethod, System.Int32 diaFragChargesForQuant, System.Int32 minPeaks, System.Boolean onlyIsosForRecal, System.String path, System.Int32 i, System.Int32 round, BaseLibS.Util.Responder responder, System.Int32 ii, System.Int32 nranges, System.Boolean secondHalf, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, System.Int32 scoreN, System.Boolean hardRtFilter, System.Int32 diaNumNonleadingMatches, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, System.Boolean isMultiplex, System.Int32[] labelIndsForMatch, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction, System.Int32 nlibs, System.Boolean diaSecondScoreForMultiplex) [0x00014] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.Work (System.Int32 nranges, System.Int32 ii, System.Int32[] p, System.Collections.Generic.HashSet1[T] validRanges, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion1, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double precMassTolPpm, System.Double fragMassTolPpm, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion1, System.Double minScore, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, BaseLibS.Mol.Modification[][] fixedMods, System.String path, MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 round, BaseLibS.Util.Responder responder, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, System.Int32 scoreN, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, BaseLibS.Api.SequenceRegressionModel rtModel, System.Int32 fraction) [0x001a4] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.FindBestMatches (System.Int32 nranges, System.Collections.Generic.HashSet1[T] validRanges, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration rtRecalData, System.Double deltaRt, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion rtRegion1, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData precMzRecalData, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaMzRecalibrationData fragMzRecalData, System.Double precMassTolPpm, System.Double fragMassTolPpm, MaxQuantLibS.Domains.Peptides.Dia.Data.LinearRecalibration imsRecalData, System.Double deltaK0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.RecalRegion imsRegion1, System.Double minScore, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, MaxQuantLibS.Domains.Peptides.Dia.Data.IDiaScoringMethod scoringMethod, MaxQuantLibS.Domains.Peptides.Dia.Data.ScoringDataCollector dataCollector, BaseLibS.Mol.Modification[][] fixedMods, System.Int32 nthreads, System.String path, MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Boolean lastRound, BaseLibS.Num.LinearInterpolator precMassAccuracy, BaseLibS.Num.LinearInterpolator fragMassAccuracy, System.Int32 round, System.Int32 fileIndex, BaseLibS.Util.Responder responder, System.Boolean hasAdaptiveMlScoring, System.Int32 scoreN, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist, BaseLibS.Api.SequenceRegressionModel rtModel) [0x00278] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.DataSimple.LibraryDiaSimple.ProcessImpl1 (MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Int32 nthreads, System.Int32 nranges, System.Int32 nlibs, System.String basePath, BaseLibS.Mol.Modification[][] fixedMods, System.Double[] rts, System.Func2[T,TResult] ind2K0Inv, System.Double recalNwindowsMass1, System.Int32 fileIndex, BaseLibS.Util.Responder responder, MaxQuantLibS.Domains.Peptides.Features.IChargeDistribution chargeDist) [0x0005a] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.ProcessLibraryDia1 (MaxQuantLibS.Domains.Peptides.Basic.GroupParams gp, MaxQuantLibS.Domains.Peptides.Basic.MaxQuantParams mqpar, System.Int32 nthreads, MaxQuantLibS.Domains.Peptides.Data.GenericRun run, System.Int32 nranges, System.String basePath, System.Int32 fileIndex, BaseLibS.Util.Responder responder) [0x00108] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Dia.Data.LibraryDia.Process1 (System.String mqparFile, System.Int32 fileIndex, System.Int32 nthreads, BaseLibS.Util.Responder responder, System.Int32 batchBegin, System.Int32 batchEnd) [0x0006e] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Work.DiaLibrarySearch1.Calculation (System.String[] args, BaseLibS.Util.Responder responder) [0x00025] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Domains.Peptides.Work.MaxQuantWorkDispatcherUtil.PerformTask (System.Int32 taskType, System.String[] args, BaseLibS.Util.Responder responder) [0x00007] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantLibS.Base.MaxQuantUtils.Run (System.Int32 softwareId, System.Int32 taskType, System.String[] args, BaseLibS.Util.Responder responder) [0x0003e] in <2ccc08da14d74cffaf694e9e9a94f21e>:0 at MaxQuantTaskCore.Program.Function (System.String[] args, BaseLibS.Util.Responder responder) [0x0001c] in <84143ecaa91a4c99adeae8279689607c>:0 at Utils.Util.ExternalProcess.Run (System.String[] args, System.Boolean debug) [0x00148] inat QueueingSystem.WorkDispatcher.ProcessSingleRunExternalProcess (System.Int32 taskIndex, System.Int32 threadIndex) [0x0009d] in:0
at QueueingSystem.WorkDispatcher.DoWork (System.Int32 taskIndex, System.Int32 threadIndex) [0x0001e] in :0
at QueueingSystem.WorkDispatcher.Work (System.Object threadIndex) [0x00054] in :0
at System.Threading.ThreadHelper.ThreadStart_Context (System.Object state) [0x00025] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ExecutionContext.RunInternal (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00071] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00000] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state) [0x0002b] in <7cd4deb8302a478d9d393f24754841da>:0
at System.Threading.ThreadHelper.ThreadStart (System.Object obj) [0x0000f] in <7cd4deb8302a478d9d393f24754841da>:0
[ERROR] FATAL UNHANDLED EXCEPTION: System.Exception: Exception during execution of external process: 1311852