maxquant_mqpar attempts to read input file in cheetah templating

galaxyproteomics / tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

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maxquant_mqpar attempts to read input file in cheetah templating #753

Open mvdbeek opened 3 months ago

mvdbeek commented 3 months ago

https://github.com/galaxyproteomics/tools-galaxyp/blob/2cce57c0b3173029ce8fb3e7b4607b3913581dfd/tools/maxquant/macros.xml#L155

causes the entire input file to be loaded into memory inside the job handler process. This patterns also doesn't work when using pulsar or where the head node can't read dataset contents. This breaks execution on usegalaxy.org currently.