NotFound: cannot find 'input_ident' while searching for 'data_processing.precursor_refinement.input_ident.ext'
File "galaxy/jobs/runners/__init__.py", line 297, in prepare_job
job_wrapper.prepare()
File "galaxy/jobs/__init__.py", line 1256, in prepare
) = tool_evaluator.build()
File "galaxy/tools/evaluation.py", line 588, in build
global_tool_logs(self._build_command_line, config_file, "Building Command Line")
File "galaxy/tools/evaluation.py", line 98, in global_tool_logs
raise e
File "galaxy/tools/evaluation.py", line 94, in global_tool_logs
return func()
File "galaxy/tools/evaluation.py", line 611, in _build_command_line
command_line = fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 115, in fill_template
return fill_template(
File "galaxy/util/template.py", line 123, in fill_template
raise first_exception or e
File "galaxy/util/template.py", line 87, in fill_template
return unicodify(t, log_exception=False)
File "galaxy/util/__init__.py", line 1196, in unicodify
value = str(value)
File "Cheetah/Template.py", line 1053, in __unicode__
return getattr(self, mainMethName)()
File "cheetah_DynamicallyCompiledCheetahTemplate_1712898486_6070771_49370.py", line 146, in respond
Fixes
which broke in https://github.com/galaxyproteomics/tools-galaxyp/pull/748/commits/79947db04a2b8dc6db2465f71a9554a320cb5255.
@bebatut is there a chance that you could go over your recent EDAM related commits and see if this has happened elsewhere ?