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gallantlab / pycortex

Pycortex is a python-based toolkit for surface visualization of fMRI data
https://gallantlab.github.io/pycortex
BSD 2-Clause "Simplified" License
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ENH Add more options for freesurfer's automatic alignment, move code for FSL's automatic alignment #528

Closed mvdoc closed 5 months ago

mvdoc commented 5 months ago

This change will allow using volumes with T1 contrast as a reference for automatic alignment. It will also allow passing a registration file for initialization.

I moved the code for the automatic alignment using FSL to cortex.align.automatic_fsl. I doubt it will be used because freesurfer's bbregister works very well, but it's there.