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gallantlab
/
pycortex
Pycortex is a python-based toolkit for surface visualization of fMRI data
https://gallantlab.github.io/pycortex
BSD 2-Clause "Simplified" License
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FIX Improve masks returned by `get_roi_masks` and correctly split into left/right hemispheres
#504
mvdoc
closed
10 months ago
2
FIX do not use a default layout selection for multiple volumes
#503
mvdoc
closed
10 months ago
0
FIX ensure correct datatype for mri_surf2surf
#502
mvdoc
closed
10 months ago
0
FIX check if shapes exist before setting the labels in the WebGL viewer
#501
mvdoc
closed
10 months ago
0
Add dartboards
#500
marklescroart
opened
10 months ago
3
FIX update URL of retinotopy dataset
#499
mvdoc
closed
11 months ago
0
ENH allow setting curvature values when starting webgl viewer
#498
mvdoc
closed
11 months ago
0
High density of points in middle of fsaverage flat map
#497
clane9
closed
11 months ago
3
FIX pass overlay_file arg when creating cutout.
#496
cchen23
closed
1 year ago
0
I can't install pycortex.
#495
stratisg
closed
1 year ago
1
install Pycortex ERROR:Could not build wheels for pycortex, which is required to install pyproject.toml-based projects
#494
Chen1997237
closed
1 year ago
3
Error while installing on Windows
#493
pystar1007
closed
1 year ago
3
Docs are not building because http://gallantlab.org/pycortex/S1_retinotopy.hdf is not accessible
#492
mvdoc
closed
11 months ago
0
MNT require cython<3.0 to avoid breaking install
#491
mvdoc
closed
1 year ago
1
Issue installing on Mac M1
#490
roohy466
closed
1 year ago
5
Integrate with Plotly and Dash
#489
rsavjanimdphd
opened
1 year ago
0
[NSD dataset] Flat image shows up in wrong orientation
#488
uhussai7
opened
1 year ago
10
EXA make path visible in fix_geodesic_path example
#487
marklescroart
closed
1 year ago
0
The parameter named 'with_curvature' has no effect in the corex.quickshow method
#486
yzhlxg812
closed
1 year ago
0
How to show basemap when doing visualization with vertex data?
#485
yzhlxg812
closed
1 year ago
1
I can't use the colormap named "J6R"
#484
yzhlxg812
closed
5 months ago
1
Removed dependency on 'six' library
#483
marklescroart
closed
1 year ago
0
MNT: updated get_data to get_fdata to support latest nibabel (5.0).
#482
marklescroart
closed
1 year ago
1
MNT use latest ubuntu and more recent actions for publishing to pypi
#481
mvdoc
closed
1 year ago
0
MNT bump version to 1.2.6
#480
mvdoc
closed
1 year ago
0
FIX stop using expired deprecation for numpy 1.24
#479
TomDLT
closed
1 year ago
0
Docs fail with recent versions of numpy
#478
mvdoc
closed
1 year ago
0
FIX `cortex.export.plot_panels` correctly shows inflated surfaces for subjects without a flatmap
#477
mvdoc
closed
1 year ago
3
FIX git URL for pip install
#476
kroq-gar78
closed
1 year ago
0
Failed building wheel for pycortex ERROR Windows 10
#475
nothingyz
closed
1 year ago
3
Different roi colors in webGL
#474
N-HEDGER
opened
1 year ago
2
PIP install not working anymore
#473
mszinte
closed
1 year ago
1
Added ROIs not visualized
#472
alexanderkroner
closed
1 year ago
3
MNT deal with some nibabel deprecation errors
#471
mvdoc
closed
1 year ago
0
Fix and test code against newer versions of nibabel
#470
mvdoc
closed
1 year ago
0
cortex.quickshow IndexError
#469
mingxue1204
opened
1 year ago
5
Fail to get a mapper
#468
mingxue1204
closed
1 year ago
0
FIX get_roi_surfs is now py3 compatible and accepts overlay_file
#467
mvdoc
closed
1 year ago
0
ENH warn non-perceptually-uniform 2D colormap
#466
TomDLT
closed
1 year ago
0
MNT warn about alpha only if dtype is not uint8
#465
mvdoc
closed
1 year ago
0
FIX avoid registering the same colormap twice to matplotlib
#464
TomDLT
closed
1 year ago
0
enable loading of pycortex datasets that have old subject names
#463
marklescroart
closed
1 year ago
1
FIX when shared_range=True, use the alpha that is passed and do not create a Volume from alpha
#462
ctseng12
closed
2 years ago
0
FIX force vmin/vmax to 0/1 whenever an array is passed as alpha
#461
mvdoc
closed
2 years ago
1
FIX add missing params to cortex.export.__init__
#460
mvdoc
closed
2 years ago
0
MNT fix typos
#459
kroq-gar78
closed
2 years ago
1
FIX Correctly handle NaNs in `VertexRGB` and `VolumeRGB`
#458
mvdoc
closed
2 years ago
5
FIX update nibabel deprecated methods
#457
TomDLT
closed
2 years ago
0
FIX Improve robustness of attribute query for `JSProxy`
#456
mvdoc
closed
2 years ago
6
Inconsistent handling of nans by WebGL viewer for Vertex vs. VertexRGB objects
#455
mvdoc
opened
2 years ago
2
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