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gamcil / cblaster

Find clustered hits from a BLAST search
MIT License
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extract -ig hits? #56

Open mafeeney opened 3 years ago

mafeeney commented 3 years ago

Hi again - sorry to bother you with so many questions, but I can't find this in the help file...

I was wondering if there is a way to extract sequences that were found in a cblaster search using -ig (i.e., the sequences that weren't present in the original query cluster.) without knowing what they are called.

Or, is it possible to word a plot_clusters command so that it only plots clusters that have intermediate genes present?

Thanks! -Morgan

gamcil commented 3 years ago

No worries :) Currently not, the extract module was written before the intermediate genes option was a thing, and I haven't gotten around to adding that yet. The second part should be fairly easy to implement, I'll see what I can do.